NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208560_1001796

Scaffold Ga0208560_1001796


Overview

Basic Information
Taxon OID3300026115 Open in IMG/M
Scaffold IDGa0208560_1001796 Open in IMG/M
Source Dataset NameMarine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3827_250 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1815
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)9.7046Long. (o)-55.3027Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007004Metagenome / Metatranscriptome360Y
F010942Metagenome / Metatranscriptome297Y

Sequences

Protein IDFamilyRBSSequence
Ga0208560_10017965F007004AGGAMKNIMIGFCLIVLIGCGTSNAYQKPTVRIVGEAQMKKLPNGNYEVTPRWIKDRFDAENSMLKQLEDCREAR
Ga0208560_10017966F010942GGAGGVSEQSRESEKKFITIEKDIEHFKYVLNELEKECEFVKNHFTTKNGERLDDIKVLHRRIESHQKTDLDFHENVRKKISEKFDALDERIRQLDKWKWATWG

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