Basic Information | |
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Taxon OID | 3300026113 Open in IMG/M |
Scaffold ID | Ga0208453_108260 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3737_250 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 728 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Southern Atlantic ocean | |||||||
Coordinates | Lat. (o) | 6.4994 | Long. (o) | -48.0 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002100 | Metagenome | 593 | Y |
F054091 | Metagenome | 140 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208453_1082601 | F002100 | N/A | IHAGDDTDFDTTWQFEPDMSAQAYTISFSFGVGMKVSAYTSGNFKISDVQVICNQIGGGEGDFTYLNKIIDPGMTNMAGVAEQVAIINFSTSVSAKVFDKPLTFQIKVNTDSGVGTYQTGIIPLFCYISPAVPKTWTTSSVLMHIHADLAHAFPIFRDQDNMNMLDTGIGL |
Ga0208453_1082602 | F054091 | AGG | MIIEEIPFFTEFVILGLVLGFGYGFTKLFLNHAKDKNRITRKEKKVETDNKLENELDKYLDNAPAIIHHLE |
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