NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208453_104752

Scaffold Ga0208453_104752


Overview

Basic Information
Taxon OID3300026113 Open in IMG/M
Scaffold IDGa0208453_104752 Open in IMG/M
Source Dataset NameMarine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3737_250 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1011
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)6.4994Long. (o)-48.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012032Metagenome / Metatranscriptome284Y
F016013Metagenome250Y

Sequences

Protein IDFamilyRBSSequence
Ga0208453_1047522F016013GAGMTKDIVPIKSVNDVDISPLLREVIEYTKDQNAVGDLEALISKVPNKDSLDWKLISGVLCNAIIEWIAKDTNNRKDLLVHLQSEVGYLLQRMGLTM
Ga0208453_1047523F012032AGGMTKQEFKTTVGIGFFSCKWIKNNGQVGKVKRAILGQYAWRFTHDPIANRDNFQEHNDYVLAFRVGAGLLPEHSRWVNINPNTITKLNRVAV

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