Scaffold Ga0208453_104752

Overview

Basic Information

• Taxon OID: 3300026113
• Scaffold ID: Ga0208453_104752
• Source Dataset Name: Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3737_250 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1011
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates
  • Lat. (^o): 6.4994
  • Long. (^o): -48.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012032	Metagenome / Metatranscriptome	284	Y
F016013	Metagenome	250	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208453_1047522	F016013	GAG	MTKDIVPIKSVNDVDISPLLREVIEYTKDQNAVGDLEALISKVPNKDSLDWKLISGVLCNAIIEWIAKDTNNRKDLLVHLQSEVGYLLQRMGLTM
Ga0208453_1047523	F012032	AGG	MTKQEFKTTVGIGFFSCKWIKNNGQVGKVKRAILGQYAWRFTHDPIANRDNFQEHNDYVLAFRVGAGLLPEHSRWVNINPNTITKLNRVAV