Scaffold Ga0208451_1008202

Overview

Basic Information

• Taxon OID: 3300026103
• Scaffold ID: Ga0208451_1008202
• Source Dataset Name: Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3321_4155 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1041
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates
  • Lat. (^o): -24.9939
  • Long. (^o): -35.9974

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005608	Metagenome / Metatranscriptome	395	Y
F015491	Metagenome	254	Y
F024888	Metagenome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208451_10082021	F015491	N/A	VPARAQVTPRKWSKKTARIFDKQFVRYVYEELYVPVKKAWGENDIVKYERNMFGDSK
Ga0208451_10082022	F005608	GGAG	MKTTKIEILKEGELIFGSPTVGKYFVRRYEDEKEMGGGFFKTKKEAHQHAREYKKSE
Ga0208451_10082023	F024888	GAG	MGTSTMDLKNIYKMVSAEVDARIKIDSKGKTPDEWAQLKGFEDWLGYAAWSRHTGGFYETAVQMLKAEWKKQDPEEFARQKKIQRDQSLREHSYINLPPEAWPTSVPNKNDFASNFIGNKKKKWQTVHKSNFTAEQLEKVYDDFGVGGEPVEYTW