Scaffold Ga0208451_1004399

Overview

Basic Information

• Taxon OID: 3300026103
• Scaffold ID: Ga0208451_1004399
• Source Dataset Name: Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3321_4155 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1316
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates
  • Lat. (^o): -24.9939
  • Long. (^o): -35.9974

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011529	Metagenome / Metatranscriptome	290	Y
F035723	Metagenome	171	Y
F076496	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208451_10043991	F076496	N/A	NFTEQRSKSIQAFIDANPDKFRIVTPKENAKTLNRQSGGYFKGRSVMGPSKSKGKLGKTS
Ga0208451_10043992	F011529	GGAG	MSWEKWSKRKTIYTLEGIRLRSCRLWLDENGFHPFLDQNELTCPDLQKSMGCTYDELPKEAWEMMDKYDMEIARRSKYVT
Ga0208451_10043994	F035723	AGGAG	MALVINKAEETTHLRGKSRFYIAGWVANRECENPQVLPNTHVPPIWEKWHEEYLSGYGDSVANGECLNFNINSNLFPGRRL