Scaffold Ga0209953_1002104

Overview

Basic Information

• Taxon OID: 3300026097
• Scaffold ID: Ga0209953_1002104
• Source Dataset Name: Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_H2O_MG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5595
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location

• Location Name: South San Francisco, USA
• Coordinates
  • Lat. (^o): 37.4958
  • Long. (^o): -122.1331
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001588	Metagenome / Metatranscriptome	667	Y
F015039	Metagenome / Metatranscriptome	258	Y
F074500	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209953_100210414	F015039	AGGAG	MSNTRRIYVTVALDILTDANEQEVIAECDYTFEHADIVDTEIMGEDEHYA
Ga0209953_10021042	F074500	GGAGG	MQKQYTLADFTNLEYYNKLRCADGDVVQYIAKRKRAKTHCLITVKNNTVLKVQKY
Ga0209953_10021044	F001588	GAGG	MQTTTNNYVFLNASDAAIVVKVNNTVVAACYNAAQLAAVFKQHNINVLTDTIMCSSSIDFAEEEGFATDNCAHNIIDAAMQQLA