Scaffold Ga0209953_1000777

Overview

Basic Information

• Taxon OID: 3300026097
• Scaffold ID: Ga0209953_1000777
• Source Dataset Name: Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_H2O_MG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10940
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (94.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Microbacterium phage Shocker (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location

• Location Name: South San Francisco, USA
• Coordinates
  • Lat. (^o): 37.4958
  • Long. (^o): -122.1331
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031446	Metagenome / Metatranscriptome	182	Y
F043342	Metagenome / Metatranscriptome	156	Y
F103043	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209953_100077712	F103043	AGGAG	MSKPKDTLVLFTLAIANTSLTANDIAFRSGVSYNTVKKIVEADERVSSVGKHPTRYYMATPDVLDEQVIRLTGDAPREGWVEWVAKVSPKLAQFVRLDKTALSEDVRKQGMVLEALGTNLIFMGRQLQEHSEKPEWFTLMGGDEND
Ga0209953_10007773	F043342	AGGA	MDATTELREFYNYIWGEEAVTETPTFVYLPVEHESKWTPYMFEWPRQREGVIRHTLKWSAIQANVFYSPALFKAANPAKDNVLGSWMLWVDFDGNAPQEWGQEAEEGKMFVPPPTLIVQSSIEGHEHCYWKLDKFVDDIEMLEDRNRALAYVMHADTSGWDADQILRPIRTTNHKRNMPVIVKEWEREDRV
Ga0209953_10007778	F031446	GGAG	MDDDDLWLVENFKLYEPHQDDYTVIEVESRGVGRPMSEPSEITDIVSTGRKRAAMMYPIFKDMKCEWANLRSAGGGVEPIIGCPGHVIQPTKGPDKGDRHHGPDKNVINNAPDNVHRICSTCHNRWHALNNKYYGPRPPADEPFIPLEEYICKKHDPETKATDKEIADNETWWATKHKLLANVDTE