Scaffold Ga0209953

Basic Information
Taxon OID	3300026097 Open in IMG/M
Scaffold ID	Ga0209953_1000745 Open in IMG/M
Source Dataset Name	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_H2O_MG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209953_1000745 Open in IMG/M

Source Dataset Name

Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_H2O_MG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11219
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (28.00%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (22.22%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

11219

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (28.00%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (22.22%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location
Location Name	South San Francisco, USA
Coordinates	Lat. (^o)	37.4958	Long. (^o)	-122.1331	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

South San Francisco, USA

Coordinates

Lat. (^o)

37.4958

Long. (^o)

-122.1331

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008239	Metagenome / Metatranscriptome	336	Y
F009493	Metagenome	317	N
F030253	Metagenome	186	Y
F030897	Metagenome / Metatranscriptome	184	N
F044500	Metagenome	154	N
F047926	Metagenome / Metatranscriptome	149	N
F051114	Metagenome	144	Y
F058949	Metagenome	134	N
F100722	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209953_100074510	F030253	N/A	MKKSIQKYLRKKKHIKYVDLYLSDTRWEIVNTVIAASSTEYNYAVQRHLDNLGQLVRKYERRRRWLKF
Ga0209953_100074512	F008239	N/A	MREILLDMYEKLWNADKDKWAWNVILKDTLEKLETKDDTER
Ga0209953_100074517	F009493	N/A	MRKNKEIVLTLGKVPSLNSFYAGSHWTKRKKAKDAALETIKSQLGHNQGAPYNSFRVTAYVRYRYDLDNSIIAVKFTSDALKTLGWIKDDSPKYFRRLLLVWSEQVPKDEAKITIELSDEHPE
Ga0209953_10007452	F044500	AGGAG	MNRLKEKAQEIKAELTLRFDSLRKIWQYSDSQPTEITLAAALVILYPTATYLELGYSPLMQVLAPIAGLYQLYCVSGKCLSCRVRASWVTFSFYLLAAVMYLYCGLLFKGPSYWGWVLLTISSFGSLKRIKKEELHRTNG
Ga0209953_100074520	F047926	N/A	MYIEIAKNTWAYAKDEQDAERIRAKYKGYKKKQGDLISRHYVVNHIDENNFIK
Ga0209953_100074522	F058949	N/A	MHNDNEYTYKKAIRAKASKSLGPTIALDLFLEFIRMWDAREYKHANEIRTEAKDMQLYEAVSLMNQYTDL
Ga0209953_100074524	F051114	N/A	MRRKEIDQVLKRNAQLFQNLGTDSTKTEVQAAKVQERKNLKSVRHYDPELVDRLLIDADK
Ga0209953_10007453	F100722	AGGA	MDNNTQIIIAVVTLLGSAGIWKYAEARLRVKAELRKEEQSTNDTVLYRDDLKNRVEEMDKALKEAHKELLELTQKVAKLETENSFLRREIDILKRN
Ga0209953_10007455	F030897	N/A	MQLEAGTLILKVSGIEVEVPVVWDLVQGGPLYAMKDGQIFLSLTAEELKALYVIYRDLELKGTVEDA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209953_1000745

Overview

Ecosystem & Geography

Associated Families

Sequences