Scaffold Ga0209953

Basic Information
Taxon OID	3300026097 Open in IMG/M
Scaffold ID	Ga0209953_1000119 Open in IMG/M
Source Dataset Name	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_H2O_MG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209953_1000119 Open in IMG/M

Source Dataset Name

Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_H2O_MG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	30962
Total Scaffold Genes	52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	40 (76.92%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

30962

Total Scaffold Genes

52 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

40 (76.92%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location
Location Name	South San Francisco, USA
Coordinates	Lat. (^o)	37.4958	Long. (^o)	-122.1331	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

South San Francisco, USA

Coordinates

Lat. (^o)

37.4958

Long. (^o)

-122.1331

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029774	Metagenome / Metatranscriptome	187	Y
F042350	Metagenome / Metatranscriptome	158	Y
F045113	Metagenome / Metatranscriptome	153	Y
F062573	Metagenome / Metatranscriptome	130	Y
F063485	Metagenome / Metatranscriptome	129	Y
F076122	Metagenome / Metatranscriptome	118	Y
F085376	Metagenome	111	Y
F099390	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209953_100011919	F045113	AGGTGG	MDIPMILSRRYPDAQWTLDGDNYSGLTWLSESPKPTLEEIQLQWEDVEFEIEVDRVQALRKAAYQNESDPIFFDWQRGEVTEQEWLDSVQAIKDRYPYPVVEEGES
Ga0209953_100011931	F085376	N/A	MYQVKVFNRQTSEVIMESDTFSTMAEADEMLSRIGSGEGYYSIVFKLDAVWSDLVPA
Ga0209953_100011932	F063485	AGGAG	MYNELLDMGYCETCGNYVPAVEDEGSLVCAYEYAEYPELATVIG
Ga0209953_100011942	F099390	GAG	MKDGTYVVRLDDEGLPMLANQINMSDGYWVSDDTGVSVHGELESNAVLDALSLMDIKDGEIVGVWQNKEVSYIDRSYHFRNKNTALKAGEAFQQIAIWDCANSKALDIRY
Ga0209953_100011943	F029774	GAG	MARSISVKVPTSLLIQQIEERIAQIDKDIEEYPVKREAFDKAEEAYKAEVANFIAAYLGENLDKIGFDYEDIIRINTGFGVYRGQSKVEVSFDTDAIVGFPKRPEAPEKPNQRESFGREYSTRKELLEKNLRILKMTSQEEVNASTYGAIMEIL
Ga0209953_100011946	F062573	GGAGG	MVKKKLKEYEVLEVRGFIVHAFSEKHALDKFNRYDYVSEGDVWPEVRELGPVNMSGTAPG
Ga0209953_100011948	F076122	N/A	MEKHEVVNEILEYLDTRRTQLSNEMSAVAYESNDYAMLDAMYEVYDHLIAKLEDDFR
Ga0209953_100011950	F042350	AGGAG	VPGRESEYMRGYLRGVSALMGLISSGKVKRLDKTNVLQYARELVEAQKDREDSL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209953_1000119

Overview

Ecosystem & Geography

Associated Families

Sequences