Scaffold Ga0209953_1000113

Overview

Basic Information

• Taxon OID: 3300026097
• Scaffold ID: Ga0209953_1000113
• Source Dataset Name: Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_H2O_MG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31653
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (15.79%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 13

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location

• Location Name: South San Francisco, USA
• Coordinates
  • Lat. (^o): 37.4958
  • Long. (^o): -122.1331
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004461	Metagenome / Metatranscriptome	437	Y
F005010	Metagenome	415	Y
F006322	Metagenome / Metatranscriptome	376	Y
F010877	Metagenome / Metatranscriptome	298	Y
F016811	Metagenome / Metatranscriptome	244	Y
F026712	Metagenome / Metatranscriptome	197	Y
F030556	Metagenome / Metatranscriptome	185	Y
F031255	Metagenome / Metatranscriptome	183	N
F032817	Metagenome / Metatranscriptome	179	Y
F035552	Metagenome	172	N
F063074	Metagenome / Metatranscriptome	130	Y
F084717	Metagenome / Metatranscriptome	112	N
F092935	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209953_100011310	F005010	N/A	MREVQKYLDMLMIDNVNLSIQASRFGWSEDVQNQLTNSALLIRKYQRRLRLIKM
Ga0209953_100011318	F030556	N/A	MSDKVFVGKTNVVTTQYGEIVKVSFGPQDFEKLNNAKNDMGWVNLEIKGKRDGGKYIQIQGEYKGASKATAVNDSDAMPF
Ga0209953_100011325	F035552	N/A	MTNADDLLLRADLETLYGVLSRLAEYAKVKEEKELIQLLLHLEKFVEIHKTRTRDMVTYRDTIEKARDEYRSLYLKYKGMEEQLDATQKVLHKIMNEEFNTEDDDKDLGF
Ga0209953_100011327	F031255	N/A	MKAEKITRNEMVEALQDTGHIFGAEYRKKNGEVTRINGRFGVRKFTKGTGKSNPNVWTIWDNNRKRYTSLIPENILEVSYNGQKWKLV
Ga0209953_100011329	F026712	N/A	MKMYFTMKDEEQEQLMDLVCMEQMQRWGTYDNYNVQEVAYRQAVSDGAMRTDNYFNK
Ga0209953_100011337	F010877	N/A	MTTKQLLVALSGNGLPKGDLKQEMFKFHNSMVGKSRYFRKEENPKTACGSCIQRVKTAIWKWYHLDDKAPDYKGFTFTGRLGAHNIPIYIFDDAKSKG
Ga0209953_100011338	F006322	N/A	MPSLRDKNGEVIRGQGAKLTDLQTNFIERVANEGLENASKIAKDIGYTNYYRDRRRTGTAFYKELMAIADSEGKTIEAAKGTNLNKLIWIRDTALMNDDMKTAMDAIKIINEMQGYKAPTKVEQTKFDVKATIDLTAPKEEEDDFLDIDYTEE
Ga0209953_100011341	F084717	N/A	VTDLLSIYKLFEEFGTSHNMVDEFKLLNSLEDLEKMEMKYRGMYIALNDANISRENSNPVYDISIDIVIVDRVALNEPVGLINSNQENLFVMGQLQDYFIQNLSGEQNFQEVNIQGFSDDDYNITAAISNATFVVGRTPYIKGIDV
Ga0209953_100011348	F004461	N/A	MSVTISNLPYGDRRPDLFIDAMVKSAAVLNRFRLIDGVKAKVNVPIFDASLTFGNDLCVFDSQSTASVGEKEMTVETYKWAFLNCKDALESSYRGLLLKKGQHNPETMDAEFKDWVFDYFAKLSAEKALTLAGTELTTEMAADADVIDYDTNAAITSANILDLMEGAYEAMSDVMLAAVYGDADRDFKPTFFLGTAAMQAYQIAIAGLYTTTPQGVVEGAIPAYYGMEVAHFASMPANEFMIAAPQNLVMLTDDYNDVKAIDMKYEAELSSDKIWGQFKLGFSYLKGEEIVYAKNFA
Ga0209953_100011349	F063074	N/A	MACTTINLTGIDYACDDLGIGGIVELHVSTRTNAITAIGLNNYDESTRVIASGNPAAGVTGIVSFGFNLKDGFSVFSEVKTVNADGTTTTVPTISVELPKMDADKISALNQIAQGGAELVAWVKTAAGTYHVSGLDYGLYAATVDGNSGTGRAEKNRFQLTLTGEENGLSYSITAADFTEATT
Ga0209953_10001135	F092935	N/A	MDKYSLIKDRKKAFAELVRAYLKFNVASATDIVVNEDGDISINGTLFKFDVSDYTGKTEAYIFFNPSNGRMVIENKSVKKIYKLEVDLVDD
Ga0209953_100011350	F032817	N/A	MAFSCSVLLSDIDINCNKRVTGGIKKAILALQEDVIITFNPFDETVVDAVEVVNEVTFEHNPKDGTTTFTENKSTSNGLGVVTTDITIQAPAVDNKVNKIDYMSRREDIVAILLHNNDTVTISGWLDGLTMNYEANSGTGVSDKSYVNITLNTESGMASLVLDDKTPFLDPTIFD
Ga0209953_10001138	F016811	N/A	MEQEQQPQEGQMIYDVGVRLAWKKKRGNGYTNMYQGTKDRPFQFVTRAKSLDHINRNPEMIAKIMSFVGLTGKANYDFYVQKEFYRKEISKSFTHKESEYSKEFGESE