Scaffold Ga0209953

Basic Information
Taxon OID	3300026097 Open in IMG/M
Scaffold ID	Ga0209953_1000056 Open in IMG/M
Source Dataset Name	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_H2O_MG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209953_1000056 Open in IMG/M

Source Dataset Name

Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_H2O_MG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	46072
Total Scaffold Genes	73 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	66 (90.41%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

46072

Total Scaffold Genes

73 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

66 (90.41%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location
Location Name	South San Francisco, USA
Coordinates	Lat. (^o)	37.4958	Long. (^o)	-122.1331	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

South San Francisco, USA

Coordinates

Lat. (^o)

37.4958

Long. (^o)

-122.1331

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002322	Metagenome / Metatranscriptome	571	Y
F002542	Metagenome / Metatranscriptome	550	Y
F015117	Metagenome / Metatranscriptome	257	Y
F022159	Metagenome / Metatranscriptome	215	N
F066645	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209953_100005615	F002322	AGGA	MADPLPYCKHVEKHILTCIQGGISIRQMLSSMQHLANAPRSLSTMYKIYGSFMEMERAKINGAVGKKVIDQALEGDFKSQELFLRSKGGWSPTQTNIEVEQDTDPDLDESAADTLLGLLGMNPNDPPEEKDNG
Ga0209953_100005624	F002542	GGAG	MHPTYLGWQVDWPVFIKMPVSANGKNWKRGEHFNWLEQGIPQDKVAILYASGYLHHNSELEVQAKVGDRLSELSGKQLDTLVNLLNTEVKARTSSTSEYNVKKCKKSKIDDKQRGLIRRFLNNSRWITEDFYRIRDNILNE
Ga0209953_10000565	F022159	GGAG	MLDTRMVSMVLAENANEFMTVKFLTKAGEQRTYNGRLNVKKYLAGGERGRKAAEVLKKHNLIPMFVGADGDKPKYKSFCLDRVIAIKAGGRHIYAMGGEID
Ga0209953_100005663	F066645	AGGA	MRVSIDFQFDKEFDGYEGHSSASRDNVEDLYTMAQFITDAMNGAGFTYVVDVGFEKDDGNIVFGEI
Ga0209953_100005664	F015117	AGGA	MAKHTMDMVLEYAKVFEENRDMGGDQNNAAKKAARHNGQYVVNAYFTSEDQITELLEGGMDPKPMGNDRVKQGSDFGIGKYIKLTRMHDHVMTFTDKRGNPTEVDFGGAPKVVNLTNGAENKAWWSFEDDGTLGNGTKAKVQFETYSNGAGVRLIAIGVTDHVAWEENSSSADDELFMVG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209953_1000056

Overview

Ecosystem & Geography

Associated Families

Sequences