Scaffold Ga0209953_1000006

Overview

Basic Information

• Taxon OID: 3300026097
• Scaffold ID: Ga0209953_1000006
• Source Dataset Name: Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_H2O_MG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 154976
• Total Scaffold Genes: 141
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 108 (76.60%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location

• Location Name: South San Francisco, USA
• Coordinates
  • Lat. (^o): 37.4958
  • Long. (^o): -122.1331
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007226	Metagenome / Metatranscriptome	355	Y
F032045	Metagenome / Metatranscriptome	181	Y
F041087	Metagenome / Metatranscriptome	160	Y
F041504	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209953_100000617	F041504	GAGG	MSITLLQHIESLNAQADLLMEQEPGLWMSKYTDDMSHWADMGVYTVEDFKRSQLINGISDASKDLYGCRMRLAWDEMSIEQMESTYENICAQLNAQYEEEKAAAEWEAECKRGLPDDCKPLPYEDYAYLEEV
Ga0209953_100000622	F041087	GGAGG	MDLWDRVIEQLRKDIEEGEVMPMYEMLQQVPKDVLIAYLPEEEAADVG
Ga0209953_100000624	F032045	GGAG	MTQYNEKAVDEAIKRDPRIKGKEAKLIKALLKGRKQ
Ga0209953_10000064	F007226	GAGG	MQKLLNKITFYFLQRAYAQMEATGDLQNADDVAEHVEDYFTYFVK