Scaffold Ga0209953

Basic Information
Taxon OID	3300026097 Open in IMG/M
Scaffold ID	Ga0209953_1000005 Open in IMG/M
Source Dataset Name	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_H2O_MG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209953_1000005 Open in IMG/M

Source Dataset Name

Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_H2O_MG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	155508
Total Scaffold Genes	251 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	176 (70.12%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

155508

Total Scaffold Genes

251 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

176 (70.12%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location
Location Name	South San Francisco, USA
Coordinates	Lat. (^o)	37.4958	Long. (^o)	-122.1331	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

South San Francisco, USA

Coordinates

Lat. (^o)

37.4958

Long. (^o)

-122.1331

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002052	Metagenome / Metatranscriptome	599	Y
F009303	Metagenome / Metatranscriptome	320	Y
F025287	Metagenome / Metatranscriptome	202	Y
F041504	Metagenome / Metatranscriptome	160	Y
F055434	Metagenome / Metatranscriptome	138	Y
F080899	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209953_1000005106	F025287	AGGA	MKVSVDVYTKDIKAGTEAFQAALAAGATDVRIQSNEDWETKEFEHLNLMFEVDHSNAVMNILDAGPFVKDSSDL
Ga0209953_1000005128	F009303	AGG	MLETYKWFATSLLILGFGLFSAGIEYGWYIQITGGVFWLVAAVVMKDKPLIATNGFMTAAGLLGKILG
Ga0209953_1000005226	F055434	AGGAG	MQYCNINTHCAVVDSANYALLTAEQQQTLTQAEKCFVVQFLADTLASLTQLNNASVVEGEEYVIRLTDALEVMQNLQALYETYEDDNAQLTFTIADAGAAICSYDTEYRECIAEQFECACDEQAKLAKQLHTTGADYSTLALRVIYAY
Ga0209953_1000005236	F041504	N/A	MAIHYTYSKKLGANPMTTLLQHIESLNAHADLMMEQEPGLWMSKYTDDMSHWADMGVYTVEDFKRNQLINGISDASKDLYGCRLRLDWDEMTIEQMESTYENICAQLRIQFEEEQAWEAWEAECKKGLPDDCEPLPYEEYADLERV
Ga0209953_1000005241	F080899	GGAGG	MSAGSSNYESVDVITTIRQTVEVPKGSDKQEILNFLAQEQSFNDAFKGTRNEAYDMYIQDIEVIDEEVE
Ga0209953_1000005243	F002052	GGAG	MRTYHFHFEITCASEGHADLERVEQMIDLSMQELVFDDEFIKALAEKESVTIQVTQS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209953_1000005

Overview

Ecosystem & Geography

Associated Families

Sequences