Scaffold Ga0209953_1000004

Overview

Basic Information

• Taxon OID: 3300026097
• Scaffold ID: Ga0209953_1000004
• Source Dataset Name: Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_H2O_MG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 179647
• Total Scaffold Genes: 281
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 207 (73.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location

• Location Name: South San Francisco, USA
• Coordinates
  • Lat. (^o): 37.4958
  • Long. (^o): -122.1331
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019234	Metagenome / Metatranscriptome	231	Y
F055541	Metagenome / Metatranscriptome	138	Y
F058743	Metagenome / Metatranscriptome	134	Y
F075969	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209953_1000004122	F075969	GGAG	MIDRQSKDGGLTKEQLQEYLDKGGTITKCPPGERTENLEFKRSFYGSKKKKADE
Ga0209953_1000004151	F019234	AGG	MSKKLRRPQAPKRRNFEAKAVRDPQGPFRPQVIKNKIKKKPKYNKIDWDD
Ga0209953_1000004212	F058743	N/A	MIEYEYYDWTSLINASARERMAQDIHSLVEQGKYWKNSPPYQTDVNVFGLPGEDWNNLKMSFIWSAFAYMKQERQIKTIKSWGYKTNVDTQEDRNTYWHQHIRQDSLVLSGVYYLHIPEGTDLETSGTEFALMGPESDGHFYAPAKLGQWIIFPGKSWHRPGILEKKEWRYIVAADMEL
Ga0209953_100000480	F055541	AGGAG	MIRWYDYPAALLAADIMLTMAFTIPYVGFVAAYALYEFGWEAYCQWRLKQENE