Scaffold Ga0207676_10000002

Overview

Basic Information

• Taxon OID: 3300026095
• Scaffold ID: Ga0207676_10000002
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1198607
• Total Scaffold Genes: 1098
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 630 (57.38%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001605	Metagenome / Metatranscriptome	664	Y
F003710	Metagenome / Metatranscriptome	473	Y
F004159	Metagenome / Metatranscriptome	450	Y
F008503	Metagenome	332	Y
F105781	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207676_10000002223	F001605	N/A	MSAPVLPEPQSLSQVPQKVLEEVIRQLRSTRNDIIRFGVWNIRNLSDEDFNRTDDRKLFGYFRQDLLETRFLSKGRRIDIIQLWKWFDNEMSAVEPMLIDGEEVFVNIQDKDLEKVRKRIAEIESFLPTLRGDDLEAFKRAKYKLRRTVMRLTYDLHHLFKRLEKYRKNFFMGGAARPERVTLEAVAEIPEPPQIDEHDEE
Ga0207676_10000002772	F008503	GGA	MKKALIVVAAIALVVWVISWFRNEDAVTKSVAKPWPGGTLESADHLPSLHANEASRRLRALGNALPKNDAIGDFVAREIARGTLTIGNPPPLPDVSAIRDLLLREPVVWERQEGIGGDNDTQTTRALQLTVARALVASALAKARANDATAWDDLHAVWKLAGSLDGHPQVMVQTAALSMARMINGAAWKLPLPAPAWFNEVQQCDSVRPLLEAFRFQTASYSKDGLRIFPTMMLAQSVDKDRGIAEELVRETRCDVKARANDLGVDLTSVWRRAFRYRAEREATANALRVREGKPIEPASRCSDGAWSFDGTTLRFSREIATAAPDRPMPLVLRVKS
Ga0207676_10000002973	F004159	AGGAG	MATNNQDDHERAAAGLDFDNPIREKAASLGQTVAENGPEALLEEIENLLPESWREQITTFPIAAVIIGVGVGVFLGMKKGDEIIAAGSSMISAAAIANVTSAMEKMGGMSGD
Ga0207676_1000000298	F003710	N/A	MAIIMSHPMTAQEMRVLQEFRRVAAETLPVAAINAIKHPAGGGEAPAASLVSKGYLTGDSGGYALTEKGKEFLALDVKPEFEEAGSAEDAAE
Ga0207676_10000002989	F105781	GAG	MERQAPSPVELLNDRRGRLSLHVVVFPLVLLLFGCPKAEPLTAQKAEEILRAYEVSTEPIYAEVPQRVWWSPKAPQDAYDVKALETLRNLERAGYLTVTESHDGDTTSYTGKVTQKGFTLIGTAPSNRGPCFRATICFKKIDGLRNFERHPNEPTTGHGDLVWHYERPTPMYELFTTKINKELQKPYASAVSFFWKDHAWHFDVMVRKSPV