Scaffold Ga0208624_1013250

Overview

Basic Information

• Taxon OID: 3300026093
• Scaffold ID: Ga0208624_1013250
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_DCM_ad_71m_LV_A (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2725
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005533	Metagenome / Metatranscriptome	397	Y
F021120	Metagenome / Metatranscriptome	220	N
F034958	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208624_101325010	F005533	AGG	MSYTKNEIALETLISNINNQFYYIGEEDDKVAPIDVKKFT
Ga0208624_10132504	F034958	AGGAG	MKSEVDQIIENLKFCIETIGLNDEQTGDVLNATNELGVNVEYFCNEFMETSSKQVHEDDYLNIALFNAMYWEF
Ga0208624_10132507	F021120	AGGAG	MKVFTIQFTEDELTELENVLDQHVYAEAIENKGSEGTIGTIHNRILDVHYQNSDGVVPVVKATHKHFRKDLDLL