Scaffold Ga0207648_10309636

Overview

Basic Information

• Taxon OID: 3300026089
• Scaffold ID: Ga0207648_10309636
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1417
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002311	Metagenome	572	Y
F005198	Metagenome	408	Y
F050050	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207648_103096361	F005198	GGA	MLADYRRRVKAQFDVLVQEARTQREKFDAIVAGVKLVLDYVDLEAAPLPDGRPPHSNTVIERCKVAWENFKIFNHDIVVTAITHALVVVRSHYPAVDLQADPAAGG
Ga0207648_103096362	F002311	N/A	MNDVLVEQDAELGQLRQALEQLQEEKAKETGQADKLAEELNGEYFLVGVTAEVVSLLDGT
Ga0207648_103096363	F050050	N/A	MEPLTEENKKLKEAMNLSEKNIQRAQRERDLAESNAWDLEYQKGVLSEHLATTKEQLWSKSEQQTTTSTQLKDASEQLEKL