Scaffold Ga0207641_10527567

Overview

Basic Information

• Taxon OID: 3300026088
• Scaffold ID: Ga0207641_10527567
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1149
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F066207	Metagenome / Metatranscriptome	127	Y
F069420	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207641_105275671	F066207	N/A	VVLRLRWLAASVALIAAAATAQVDKLDLRLPKVTDGVVASVRQVNSGSETALAPRSGPRQVGTQSALDQAPLVGAVVFMPTGPASPDQWQFGAAGTPEMQPWLAEGGVEVIVTMDDGERRTFRPRNPGRFNVGQRVTVREGELVPLGSRKDGG
Ga0207641_105275672	F069420	GGAG	MDVMNRSRPALPAIAIVALLLAGCGSPPTWQKTGATETVVQNDSDDCRVKARLAPLPERYISSPTSQSMTPQSITAPVLAREEQRAMFEADEFQKCMTAKGYAASR