Scaffold Ga0207641_10000690

Overview

Basic Information

• Taxon OID: 3300026088
• Scaffold ID: Ga0207641_10000690
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36445
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (8.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006921	Metagenome / Metatranscriptome	362	Y
F013192	Metagenome / Metatranscriptome	273	Y
F043109	Metagenome	157	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207641_1000069021	F043109	N/A	MSLKLVQRPANKQSSIYSAFCSLYANKEIAMAELPEKEIFRTKVKWQSLLPDLLLILFAIAFPFTSFIIDLNDHRADWFARSGAVSAIIGIVLASRSIKKHNQKFFSNIERNDLGKEMLHTSIPQLKIDKWTLVLSIIGTLIWAYGDKVIELFLE
Ga0207641_1000069024	F013192	N/A	VLIDRFTEQTRQFIKLLLRGERYPGEYKNCKDTLESIQKQLLWEEKRSDHNISVSALGKLSININKT
Ga0207641_100006905	F006921	AGG	MVFALERKPLQKPFNMKKSLFRTACLLTGILAISNIQAQSLKNLEDNNGFKKYKLGSKFVLGLGVKYKDAEGADKIVIDYTKDMIGDIPVKTIELYYLKDTLAKIIVQVSPEYYEKLIAACKSSFGQPTKDFSNNEKVKSDSTTSVNYYKDNYIWKATRLRMEYFYLYPKISSGAYGTRSLYLAYILNDYGQRLQRVQRGINSAKNF