NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208113_1140775

Scaffold Ga0208113_1140775


Overview

Basic Information
Taxon OID3300026087 Open in IMG/M
Scaffold IDGa0208113_1140775 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_NADW_ad_2505m_LV_A (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)526
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070216Metagenome123Y
F076178Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0208113_11407751F070216AGGAGMKYLWILLLFIPLFGQTTYTEAEALEMIKQRDAQWEGKIEKADLLIASQKVLITDYEGLVKELEDQA
Ga0208113_11407752F076178AGGAGMGMFRSHPDDYERRIPTDGDYNRVTEVAASTTFHSTGSNAGAGFIIENVTNVVIHCAGGGILGGDQCTVKVLYPIGVKKVVNGSSGIVHVLHR

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