Scaffold Ga0208113_1016047

Overview

Basic Information

• Taxon OID: 3300026087
• Scaffold ID: Ga0208113_1016047
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_NADW_ad_2505m_LV_A (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2432
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009992	Metagenome / Metatranscriptome	310	Y
F099863	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208113_10160472	F099863	GGA	MSEEESKAIKKKERIFDFFWSLEEQQTILGLLKGRKMKKELKKHLKDKEVKNV
Ga0208113_10160473	F009992	AGG	MNSEVPHDLGYVLGNGPSRDRNRKQYKHGITYGCNSIYHEFPVDVLVVMDAWYQFQVIASGYPAEHECLFGGYNPIPIGVPPESLNPPHYGIHYYNPEDRKRADNWYYYATSAEDYERAKKENYAMPYWKPDCGYVCWVGENYKIKEIDYGVIPIEDLRPPSGAYALQEALKGGHDRIEVFGFDSIAGVFSTSSQIAYKEHDSDDGKIIEDRLDKWMTFYKTVTEHYNEIEIIWHKK