Scaffold Ga0208113_1013866

Overview

Basic Information

• Taxon OID: 3300026087
• Scaffold ID: Ga0208113_1013866
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_NADW_ad_2505m_LV_A (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2697
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005464	Metagenome / Metatranscriptome	400	Y
F015350	Metagenome	255	Y
F039182	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208113_10138664	F015350	N/A	MKKIYKWLIIIVVAILVGWQYDAALQKNLHEVEIRIKKFESVDLFNILEQISLAHIESIESVDILNKKQMEVQALEKEIKEKFAIQERELRTQVKTIETKLQKLRSELNDGLTKIERNVSTIDSVVDEKFKTLWMMINNK
Ga0208113_10138665	F039182	AGAAG	MKWIYIIVIAVALSFSGCADTADAESSAAITPVENQEETTNTTSDDETWVAVVLTWNPVVRVIDKEFTSEVECWNFYEGGTGESRFGEQHRDHQGNLPTKDSHFGPDYLEYPIRTYRGKDGQGSVWLTCDTKGRYEDL
Ga0208113_10138668	F005464	N/A	MMNIRDKDNVFRIVGWALSLLCMIIGSYFLWPHIHVALLGIVFFYLGVRIFNFATFKEYKEQRVKLLLKLSEW