Scaffold Ga0208113_1011025

Overview

Basic Information

• Taxon OID: 3300026087
• Scaffold ID: Ga0208113_1011025
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_NADW_ad_2505m_LV_A (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3158
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005749	Metagenome	391	Y
F013775	Metagenome	268	Y
F037260	Metagenome	168	Y
F040145	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208113_101102510	F037260	N/A	MAKKKKTIPFHIAHNYKQWTSDQGYTFWAKDEQDAKFYLDKTEGNLGSLKQIKE
Ga0208113_10110254	F013775	AGGA	MVEKRQYETIKEFAKDYRTEIIPMMKSKGFTLSINTSKGSYWNDGRMNFMIKKVPNNFYVWTNEYSRYNKTEKSQKLLNTIRDRVRNLISVTTDGLDVDLNFDYHKDVRYKPIPEGWDFDNVNN
Ga0208113_10110257	F005749	AGGAG	MKKKSWLLMMSFDEHDGSSNEIKTLYHGKTKRNMVKTMDLFQDMNEHLVLALVEVDKKSTYDKIVDKEDSEEMFFMDSKSNWNNGKTYEDLKEEALEEMLMGSLIKGEMGYA
Ga0208113_10110259	F040145	AGGA	MTKKEWLRERVFVDMYGRPYNLSEVPMTHMKRSEAFAKRKLSKKEISYLYRKNEKTIIIDGC