NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208880_1008878

Scaffold Ga0208880_1008878


Overview

Basic Information
Taxon OID3300026085 Open in IMG/M
Scaffold IDGa0208880_1008878 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_SurfaceB_ad_5m_LV_B (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2053
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009303Metagenome / Metatranscriptome320Y
F037991Metagenome / Metatranscriptome167N
F055765Metagenome / Metatranscriptome138N

Sequences

Protein IDFamilyRBSSequence
Ga0208880_10088783F009303AGGCGGMLNALKWVATATLIVGFGLMSAGNTDGWYLQITGGILWLIAAVMMKDKPLIATNATMTIVGIIGRLFG
Ga0208880_10088784F037991AGGAGMKTKIAMDTIISAIEDMNQQELNRVVEAVKYARSQGHKQMANSLSRGDIVTFEGRGRTFKGTVIKTAIKYVQVDCGIDGKWRVPGAHLQVVKAA
Ga0208880_10088786F055765N/ANVGFDYDAEEMRISFGIDVNDKIWTSGDSIWSETKAKKAVAVESLSLAATHSKMHYSKEDWDKLMEVDLYWSGGLDGYCYYDGSGKDGTWNDGEEYSIEEKGGLINGMKKEGTGDGYIYTDDGFVRNLENYLTDKCDFDKALFDYLNFEYSEQGMQEAGAVNFDVEMDGDFWLAVKEEMDAEDDKLRAKAFA

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