Scaffold Ga0208880_1008857

Overview

Basic Information

• Taxon OID: 3300026085
• Scaffold ID: Ga0208880_1008857
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_SurfaceB_ad_5m_LV_B (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2055
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061292	Metagenome / Metatranscriptome	132	Y
F102575	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208880_10088573	F061292	AGG	MNIKTLKNIMKEVNEPNEFVMTPHNLVHPLYWIWKVENCRLKTLDSRLSTKRKEQNRFDVFVWGGYIAPRDYRYKQVGNDFHIEFIRANFPATIENPNDPNYGQPWAFEVDDEVKIEGDLERVR
Ga0208880_10088574	F102575	N/A	GFKFRTRIDSFDNQQEVGEGSERIIRTSFTMVVNAYLLPETYDDKPTVRKSFTPKKVVWGVETDLTGQMFTNPNIYNEYQNVIDFVAIRSSQRAELVSTPAEMSPAQTNGGIIKITNVRKPVLPTELIGSFDTLNWFRVYINTEFKPASTYTYSFNGVTNEISFTFNETLGFALDSNDEIDIVGKFEQLXI