Scaffold Ga0208878_1058120

Overview

Basic Information

• Taxon OID: 3300026083
• Scaffold ID: Ga0208878_1058120
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_SurfaceA_ad_5m_LV_A (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 988
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Kanaloavirus → unclassified Kanaloavirus → Kanaloavirus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014748	Metagenome / Metatranscriptome	260	N
F053343	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208878_10581201	F014748	AGGA	MPVNIGDRVQTLHTLTPITGEIVDMYKNLVTIADDDAETVDQLLSFHADDLEVV
Ga0208878_10581203	F053343	N/A	WWDSKRSVTNLPRQVGLGGYNEYIKRNFSLHSNYHSIMKNPQSHRSTEELKTIVKALSKLRLLNTPEEDQRLFECEQELRKRKREQDFIDAHFQVITYN