Scaffold Ga0208878_1027848

Overview

Basic Information

• Taxon OID: 3300026083
• Scaffold ID: Ga0208878_1027848
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_SurfaceA_ad_5m_LV_A (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1531
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005670	Metagenome / Metatranscriptome	393	Y
F049690	Metagenome	146	Y
F068937	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208878_10278482	F005670	N/A	MKLLTRQEYNLILRSLDNYDVFMTKRDKEIREDLEDKLYYNLYNPKDGVAQTNVNVSALYDIQTEKDLSEDDEIKSLNFTH
Ga0208878_10278483	F049690	N/A	MPTISTNKELLNVINDDVQNVKQFTKMPAISDELYNELLEEFNNDSYYFFN
Ga0208878_10278484	F068937	GAGG	MNQRATEYDLNNSQLEQLIDKYIETIVDSMSMEDLQYYVTNNMAEFMHELTFSGILEEIKYTLDEEMLEEFITTIKGE