Scaffold Ga0208878_1015965

Overview

Basic Information

• Taxon OID: 3300026083
• Scaffold ID: Ga0208878_1015965
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_SurfaceA_ad_5m_LV_A (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2134
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007756	Metagenome / Metatranscriptome	345	Y
F012583	Metagenome / Metatranscriptome	279	Y
F013094	Metagenome / Metatranscriptome	274	Y
F023620	Metagenome / Metatranscriptome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208878_10159651	F007756	GGAGG	MTKLNTVKRFYVNVKFEKYGTYTIEATSKEHALEIYNDGDYGWSDYSEDFGEFNEVVEDVEEEVFADTQLSLAGVF
Ga0208878_10159652	F023620	GGAGG	MKTALFLSEYDLSTVHYLCTYYKDNANLDAQDVDYINELQNRVNSLMEVSK
Ga0208878_10159653	F012583	AGGAGG	MSLSEQVKIKVFDKYIMRGGDQSLQNIEDICDFGFNMCQLGYDTETFNDVVIDVICKLTEKLEANS
Ga0208878_10159656	F013094	GGAGG	MISAFFTGVVVAIPTSLVMMKLLNSSLFINNSELRDVNQKISVIITQLDDYREEREKLFNVSNDTK