Scaffold Ga0208878_1010612

Overview

Basic Information

• Taxon OID: 3300026083
• Scaffold ID: Ga0208878_1010612
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_SurfaceA_ad_5m_LV_A (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2712
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005533	Metagenome / Metatranscriptome	397	Y
F023620	Metagenome / Metatranscriptome	209	Y
F025518	Metagenome / Metatranscriptome	201	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208878_10106126	F025518	GGAG	MNEKLVHNTKTSLREEAKAFLPTVKEFYPHLDDMLTDRIAKYCAIYSKGTDKASIRQAINDFEEVFDQELTQ
Ga0208878_10106128	F023620	GGAG	MKTALFLSDYDLSTVHYLCSYYKDNANLDQQDIDYINELQNRVDSLMEVTK
Ga0208878_10106129	F005533	GAGG	MSYTKNEVALETLISNINNQFYYIGEEDDKVAPIDVKKFTEHCVAFIDSLEIER