Scaffold Ga0208878_1001072

Overview

Basic Information

• Taxon OID: 3300026083
• Scaffold ID: Ga0208878_1001072
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_SurfaceA_ad_5m_LV_A (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9472
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (46.15%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011306	Metagenome	292	Y
F034753	Metagenome	174	Y
F035800	Metagenome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208878_100107212	F034753	N/A	MKSIITDLIEDYKESASYWSGSIFESVTHFSTDYKGKFGEELLFNLIKKHTEIPVEWDADSNTANDDGVYDLFWTLNGNKKRVEVKTSGRTVSNGRPIGWQHENVYYEDNKWDNVVFLDYDANDVIFVTVVDYNQIVKNNTIDLSLFGKSGHKRKNEEGKAKVDFSMKSIQNGIDKGLTFEYDLNNPDDEGLTYFLEEKLGE
Ga0208878_10010725	F035800	AGGAG	MSILKNIIDNKNKIQLFLENLNCDLDKWFVYNCATGDNPTLRKFSHKMSYRIMNSNTETFKSRFLYLKIKKDMVVTCEHYDAIKVDNMDIEKDKYDDIGNGYLRKDLFGELGDLFSNDKIYTVHYIEALGGVDPHRDPWIYDSKYKNIIFYDNLPEDAKLKINGDDILINSPQNTNFGNDTHSYQFKTRPFPLKILHIDYEDELR
Ga0208878_10010729	F011306	AGGA	MIKYQMYERELTKGGVYQYHTCVDKLDNYDIDLFDYEINITPKNETSPHDYFHISCLRKTVDDYIRKSVLDYFKIPVDFPVVYLTRKVPFTPEFKCGFYLNTFKKFKSIYFKKTLNTIKLFKGLYNDIILAGDFKEDGSFVDESINIEIMPIQSKEVYFKIKQILIDKFNIDNFESCDKLFNDYSIEKFHFHVKIKYSVNELVVKFYNTYPVNPFINYYDNKKKFR