Scaffold Ga0208750_1017397

Overview

Basic Information

• Taxon OID: 3300026082
• Scaffold ID: Ga0208750_1017397
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_O2min_ad_340m_LV (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1748
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018265	Metagenome / Metatranscriptome	236	Y
F030785	Metagenome / Metatranscriptome	184	Y
F033080	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208750_10173972	F033080	AGAAGG	MIDVDKIAEKVANEPLEDELKNWIIGETEDGHMPLVRKPQHVIDEAKVDEAIMRRHDLRQMEMYDDPYMNWSGLR
Ga0208750_10173973	F030785	AGG	MKKATIEILEEGEKIFGSRTSGEYMVRRFEDGIEMGGEFHYTLTEAGAAVRKWENQTEK
Ga0208750_10173974	F018265	GAG	MSMERHTLRAVKLTQNIFELNRVNKELVVVRKIIEDLKQRKMELMSS