Scaffold Ga0208390_1004753

Overview

Basic Information

• Taxon OID: 3300026081
• Scaffold ID: Ga0208390_1004753
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_SurfaceA_ad_6m_LV_A (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4586
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012583	Metagenome / Metatranscriptome	279	Y
F013897	Metagenome / Metatranscriptome	267	Y
F029784	Metagenome / Metatranscriptome	187	N
F034959	Metagenome / Metatranscriptome	173	Y
F082798	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208390_10047531	F029784	N/A	GYKCFANANKSQGTYYTCCDLDTREIRYVTYIYDGYFMGYYLVQSAIKVAENFANCQEKIFLSSASNKWPYYKGNDDEYTIDRQYPMQYDIPSLDEVEYSYLDSLLTAGTSK
Ga0208390_100475311	F012583	GGAGG	MRLSDQVKIKTFDKYIMRGGDQSLQNIEDLCDFGFNMCQLGYDPEQFNDVVIDVICKLIEKLEDNS
Ga0208390_100475312	F034959	GGAGG	MKIEVNKEQLEILKYAILWYECNDKEEERIVNELEEKLYNAQEQDLLRSFTNMGGLQ
Ga0208390_100475314	F082798	N/A	MSELSALKQAQYHLKELEGHIKDNKWYSHLYQHLAAVEGELQRQVETLEGAKVKIIDNSPAGEIPETDRLYDVLELSTNGFFPPDNSYTSLSRVGASQKYESLLSQGVSPDSIKIVRVK
Ga0208390_10047533	F013897	GAGG	MNLTKDQLLALMNTIDFATDNDASYEEYTIIKSGTSDLETIKDILYNEYIHQTQ