Scaffold Ga0208390_1001555

Overview

Basic Information

• Taxon OID: 3300026081
• Scaffold ID: Ga0208390_1001555
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_SurfaceA_ad_6m_LV_A (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8308
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (80.95%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F089015	Metagenome / Metatranscriptome	109	N
F089017	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208390_100155511	F089015	N/A	MIRNNEKRGYIMKVTAEQFVESLAQMPDAEKQKAANLLVNKWFHLTQSFTGMVDAEMQDLHINEQAEAFEIQKAAENGTKLF
Ga0208390_100155515	F089017	GGAG	LNDNVIEFPVKFKGQKTPIIIDDLDAVKMKEDLDFCDNLAEGLMINLIHNVGENGFDIKKDRFIGDISFLNEVVRGALYRQMGFAHPMQSFMDLVVKTEMNEEDKTIVTKVNLHKIDDLIPQSNDNGDGDDIS