NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208390_1000161

Scaffold Ga0208390_1000161


Overview

Basic Information
Taxon OID3300026081 Open in IMG/M
Scaffold IDGa0208390_1000161 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_SurfaceA_ad_6m_LV_A (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21465
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (60.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F099228Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0208390_100016119F099228N/AMALKFRCMMNGKMRKLNKDFYNIATNNDWVDLSDFWSWPLTQILDDVKAIPDNLWAKPFDGGDKEKGEGYNNTQSNINLPGTEKGSEKIPAKGWKSVMFLNDTGISDNQILTFDAMYKNQWEYKKRLKYVNKVRTWTDIAKFSPTLKTFFEEKIFPYIGVAYIFVTQLEPGGIISQHNDIPDGAKPLNTGEKLFAYDMCNVFNLCLNDVDYCHAVFNKKIMPSHDGCLMWTNTGKDHWVVNMNREPQYKIIFQGFFKKPFREKVVNEKSEYLNAQDIH
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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