NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207963_1036701

Scaffold Ga0207963_1036701


Overview

Basic Information
Taxon OID3300026080 Open in IMG/M
Scaffold IDGa0207963_1036701 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_NADW_ad_2500m_LV_A (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1399
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007771Metagenome / Metatranscriptome345Y
F010791Metagenome / Metatranscriptome299N
F063775Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0207963_10367011F010791GAGMSFEFRAGRKRVVKSVETVEEANKLMRKMIAIRNKNFLWENIDVKTGHLRAVDELEKVMGAIFDVFDTMSIFVNGKSVRRIWSRGF
Ga0207963_10367012F007771GAGGMETIIHAKNIDKKVRLALYGMLHHSATKLFPRRMKYVSIKLHLKHYVYDGVAMIEEDTKITNPRNFKIIIDPYRLKKDDWGRERNYSEWVSELLRALAHEMVHVKQYVMGELTFKKGQMCWKKQKVDFKSEDDYYRSPHEVEAYGLEKWLQLGYTATWNKIEEKNG
Ga0207963_10367014F063775GAGMKEKIEKIDMSLDRSIVELCDSYWEFKDSDEIKTEEEESEFGALEDYLEGMGFVSHL
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