Scaffold Ga0207963_1024092

Overview

Basic Information

• Taxon OID: 3300026080
• Scaffold ID: Ga0207963_1024092
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_NADW_ad_2500m_LV_A (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1935
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED46 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001625	Metagenome / Metatranscriptome	661	Y
F005948	Metagenome / Metatranscriptome	385	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207963_10240923	F001625	N/A	MALTISTSDWTSANVRKTLSWQAALVSKLRVYAIKVTFGASDNYATNGVSADLKEGRISTLVAVIPTYSNISREVVYDKANEKIKILEVGGSTGSAMTELANNSSATNSKIFEFLVIGY
Ga0207963_10240924	F005948	GAG	MVELNHDVKSFNSDTLIKGGHGVLVNVYVTKVGSGSNKVEFRNGTTGSAPIVFTIFTAAQGTYVGIQRRFENGIYAKCTGSAEILAVFR