Scaffold Ga0207963_1014139

Overview

Basic Information

• Taxon OID: 3300026080
• Scaffold ID: Ga0207963_1014139
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_NADW_ad_2500m_LV_A (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2904
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005149	Metagenome / Metatranscriptome	410	Y
F015796	Metagenome / Metatranscriptome	252	N
F033843	Metagenome / Metatranscriptome	176	Y
F059066	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207963_10141392	F033843	GAGG	MKIRKTIYWIVGVLVFFGWCDLVWGQTEKWSGESVTLYTTLAGLSMIDAKQTFMMDEYRSYFDEIEPITYAHEVNPLMGELPTNDRIVAVKLLSGALTFYGLNKMKEVNRKKALTWLNVFYLIVVIHNNSLGLSINL
Ga0207963_10141394	F005149	GAGG	VNKTKCLLCTALTETGQGFYDHLEDVHMMPIRRLRFGDDGRPREESHTECMERFKFNHEEYGTELCWCPDCLGGETLTMVNKVCSKHGQLYIKGEHKNG
Ga0207963_10141397	F015796	AGTAGG	MNRQQMKKYKDTNDRILIQEWFSKKGHHLTEGGYYDVDLEGDEFDIEISHLSFDSLWNRWKKENRFRIEIRKRNHYWNGIYNKSHTTHFIQLNRSGKELLVYPQYLIMEYSNNEVELEYLRSGGYNLKERTFMSIPFDIGKDVIKRYEI
Ga0207963_10141399	F059066	N/A	NIKVKNITEEQYNHFFQKWLYTYGGATDVVSLEQFIKEYDPDWYGDVDTYSNKVCPCVMCFEENIDG