Scaffold Ga0207963_1007666

Overview

Basic Information

• Taxon OID: 3300026080
• Scaffold ID: Ga0207963_1007666
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_NADW_ad_2500m_LV_A (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4530
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003091	Metagenome / Metatranscriptome	508	Y
F005749	Metagenome	391	Y
F012582	Metagenome / Metatranscriptome	279	Y
F013775	Metagenome	268	Y
F015023	Metagenome	258	Y
F037260	Metagenome	168	Y
F040145	Metagenome	162	Y
F041256	Metagenome / Metatranscriptome	160	Y
F081450	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207963_100766610	F005749	AGGAG	MKKKSWLLMMSFDEHDSSSNEIKTLYHGKTKRNMVKTMDLFQDMNEHLVLALVEVDKKSTYDKIVDKEDSEEMFFMDSKKNWNNGKTYEDLKEEALEEMLMGSLIKGDMGYA
Ga0207963_100766612	F013775	AGGA	MVEKRQYETIKEFAKDYRTEIIPMLKSKGFTLSINTSRGSYYHDGRMNFMIKKVPNNFYVWTNEYSRYNKTEKSQKLLNTIRDRVRNLIAVTTDGLDVDLNFDYHRNVRYKPVPEGWDDEQNS
Ga0207963_100766613	F041256	GAGG	MNLNDYLIENDRHIGDLVKLFSVGTVVDKVNGDTFPMLAGGAIGFDEPMNLMEMDISDDSWEWYNSLANSDREIVDEVMDELSYFEYVLGNK
Ga0207963_100766615	F015023	GAG	MNTTFKHIDLNDSVNDFMNHLNNNMNKPDGYSYDLNTRGSKYFKVEMLSHGSRSVYCFINKRNGEILKSAGWRAPAKGARGSVLVTESYANSDWSGGWLYKVFGNVYK
Ga0207963_10076664	F081450	N/A	MVVYMTQFEEKSCKVLGVIIFLLVVMTWLQISGCSCPVPPPPSDYIDEVDTSNFV
Ga0207963_10076665	F012582	AGGA	MTEFHKKLRHLSTTMLHWAEDNKIQRKVVEGIAGDYEIPQRNGIDWKFDFKFVTKLDRMLSDGLDDKLKKKEMEMCNQLYKYYGSVYDPV
Ga0207963_10076666	F003091	AGGAG	MTMLPQKPITKPGEGKQRQKYLSQERYLEERWEISLGLKGPKRLEGESHEDFQDRRRAENGLLKEYLRGVWVKKEE
Ga0207963_10076667	F037260	N/A	MAKKKKTIPFHIAHNYKQWTSDQGYTFWAKDEQDAKFYLDKTEGNLGSLKEIKE
Ga0207963_10076668	F040145	AGGA	MTKKEWLRERVFVDMYGRPYNLSDVPMTHMKRSEAFAKRKLSKKEISYLYRKNEKTIIIDGC