Scaffold Ga0208748_1062867

Overview

Basic Information

• Taxon OID: 3300026079
• Scaffold ID: Ga0208748_1062867
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_Bottom_ad_4513_LV_A (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 987
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Oligostraca → Ostracoda → Podocopa → Podocopida → Cypridocopina → Cypridoidea → Cyprididae → Cyprideis → Cyprideis torosa (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004906	Metagenome / Metatranscriptome	419	Y
F099449	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208748_10628671	F099449	N/A	ERYLPYRRNGAYGYLSSEEQYLNLENLTRTEHPEIITNRNTFNKKVRNQMQDIDKDGLSSTKFRIVNRKDYQGKHEVIEVVI
Ga0208748_10628673	F004906	AGGAG	MATKKTDARDALDSNEGNELTAIAVKSLTNVEEKLEAIDWKLWEIYNIVKNYVENNPSTGVTAPQVSQPQASAADIASEIAKALGGVQEPEPKRSVVGKLFGK