Scaffold Ga0208748_1055645

Overview

Basic Information

• Taxon OID: 3300026079
• Scaffold ID: Ga0208748_1055645
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_Bottom_ad_4513_LV_A (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1068
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013775	Metagenome	268	Y
F041256	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208748_10556452	F041256	GAG	MNLNEYLIENERHIGDVALLFSVGTALDKISGDTFPMLIGGKIGVDEPMNLMDMDISDESKEWYNALAFGDKIVVDEVMDDLSYFDYVLGDK
Ga0208748_10556453	F013775	GGA	MVEKRQYETIKEFAKDYRTEIIPMLKSKGFTLSINTSRGSYYQDGRMNFVIKKIPSNFYVWTNEYSRYNKTEKSQKLLNTIRDRVRNLIAVTTDLDVDLNFDYHRDVRYKEIPEGWDDERNS