Scaffold Ga0208748_1037192

Overview

Basic Information

• Taxon OID: 3300026079
• Scaffold ID: Ga0208748_1037192
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_Bottom_ad_4513_LV_A (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1377
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009987	Metagenome / Metatranscriptome	310	Y
F010942	Metagenome / Metatranscriptome	297	Y
F101352	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208748_10371922	F010942	GAGG	MMDQSRESEKQILSLKKDIEHLQYIITEVEKESELIKKYFTTKNSERFEEIKTIHKRIDQHLQTDLDFHENVRKKISDRFEIINDRIRHLDRWKWATWGALIIIGSLVGYFFPVPRLVGLFN
Ga0208748_10371924	F009987	GGAGG	MIGAIIGNALGLGLKIMDKMEKNSDKHSFEEFKARKKELDNSLADADVEGIDSMFEYLAERARGGNTGRKG
Ga0208748_10371925	F101352	N/A	AGVDVFNVNDNEFMNCKHGKKKHERWSNYVDMDSESGKRIYGYAKKNPKKSIIVQHDKTGHMLYLKKYDMGGES