Scaffold Ga0208748_1012231

Overview

Basic Information

• Taxon OID: 3300026079
• Scaffold ID: Ga0208748_1012231
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_Bottom_ad_4513_LV_A (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2720
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F072433	Metagenome / Metatranscriptome	121	Y
F098233	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208748_10122316	F098233	AGGAG	MPKKYKATRRNRNLPVYDLIWKISKLFNSECEVCLRKMSKPQPGFVIHHLKYRKGEKNHKDFVSRLKYYQFLLPIIKREGIHDNFAFICNACHHSIDGPRGLKRRKKINVLRLFLMYFRTNT
Ga0208748_10122319	F072433	N/A	MFSTKIKIELEKKDDIFHLEPLGDIHIGHAGFNEELYKERIKAITREKNRYTIFMGDQLDAITIYDKRFNPDTSLEHDIDNQRKTWQELTQPLIDAHKKSKNNKIWGLL