Scaffold Ga0208748_1006885

Overview

Basic Information

• Taxon OID: 3300026079
• Scaffold ID: Ga0208748_1006885
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_Bottom_ad_4513_LV_A (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3944
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004643	Metagenome / Metatranscriptome	429	Y
F074779	Metagenome	119	Y
F076495	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208748_10068851	F004643	N/A	LNELAKYHDKEFWEENGWVSCFECDIIFENLEKLYEHQDLHLEEENQKK
Ga0208748_10068856	F076495	AGGA	VKTFKEFIKFQKVTVKDKRGKSHTMQVRIRPGDTHVAIMHYDAQPATNLSSAVKAHTNLSFGSEKSLEKQISHAKKKFGLKKVEIQKIDKKYL
Ga0208748_10068857	F074779	N/A	MKSFKGYLEEAQAGFNTKDMIFTNADTPALILSTTALERAFGGLARIKGWHVTDLTGFKGLKKLQGKKSSISVMTEIEPSDHQPFDGIETEGGFVVELEGTELISSGQDAWSERLEGGRRGISVTKELFPNMYRHLEFMVKKIYEKYSKESYPTDSRKAGIAFNKLGQILSKKEKGQFIKEYIDNCETILTKNKRARDELRKYGRAMNVSLNKKHFYNESVVNQISIKNVYVVLEKWEAFGRTDWGSEGDDELKYIKTIWKDVQMKSQKELVTLVNKK