Scaffold Ga0208749_1001194

Overview

Basic Information

• Taxon OID: 3300026077
• Scaffold ID: Ga0208749_1001194
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_DCM_ad_63m_LV_B (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6024
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (52.38%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001479	Metagenome / Metatranscriptome	687	Y
F021120	Metagenome / Metatranscriptome	220	N
F034958	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208749_100119413	F034958	AGGAG	MKSDFDQLVDNLEFCIETMGCNDEQVGEVLAATNELGLNVEYFMNEFMETSSKEVHDPDYLNIAEFNAMFWEF
Ga0208749_100119414	F001479	GGAG	MSKEILFLCDVFDRWLDENNLPHWSADDILYGENACKLTGNQKYWLESFISTWDIINQTT
Ga0208749_100119417	F021120	GGAG	MKLFTIQFTENELTELENVLDQHVYAEVIENKGSEGTIGRVHNRILDVHYQNSDGLVPVQEVAQGHFRKDMDLL