Scaffold Ga0208749

Basic Information
Taxon OID	3300026077 Open in IMG/M
Scaffold ID	Ga0208749_1000226 Open in IMG/M
Source Dataset Name	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_DCM_ad_63m_LV_B (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026077 Open in IMG/M

Scaffold ID

Ga0208749_1000226 Open in IMG/M

Source Dataset Name

Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_DCM_ad_63m_LV_B (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14416
Total Scaffold Genes	34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (55.88%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

14416

Total Scaffold Genes

34 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (55.88%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location Name	Southern Atlantic ocean
Coordinates	Lat. (^o)	Long. (^o)	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Southern Atlantic ocean

Coordinates

Lat. (^o)

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001479	Metagenome / Metatranscriptome	687	Y
F012353	Metagenome / Metatranscriptome	281	N
F021120	Metagenome / Metatranscriptome	220	N
F028529	Metagenome / Metatranscriptome	191	N
F034753	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208749_100022610	F021120	AGGAG	MKLFSIQFTENELTELENVLDQHVYAEAIENKGSEGTIGTIHNRILDVHYQNHNGLVTIEKATHKHFRKDMDLL
Ga0208749_100022612	F001479	GGAG	MSKEMLFLCDVYDTWLDKNNLPHWSADDILYGENACKLTGNQKYWLESFISTWDIINQTT
Ga0208749_100022614	F012353	N/A	MKLMLYTTGEWKVDPNKDITFPLVRWLFKLFPILDGSEIEINQVDLGNEFAYGFCQEDDGEFLIHIHNRMDLREYVKTIIHEITHVRQTLDGITDSNAREDEAYYLEEQLSKAFWDRLKSGTSNVES
Ga0208749_100022630	F034753	AGGA	MMKTIVTNLIEDYKKSASYWSGSIFESVTHFSTDYKGKFGEELLFNVIKDNTNIPVEWDEDQNTNNNDGVYDLFWYLHNGKKMRVEVKTSGRTVSNGKPIGWQHENVYFSDNKWDKLVFIDYDANDVVFFTIVDYNQVVKDNTLDLSLFGKKGHQRKNEKGKAKVDFSERSIKNGIDNKVTFNYDCNNPDNEGLSNFLEEKLGK
Ga0208749_10002268	F028529	GGGGG	MRLSKFLTEDTETKTVNLTLTFDERSELLRHLEMFDENIDQLHPLVESVQDKLLGID

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208749_1000226

Overview

Ecosystem & Geography

Associated Families

Sequences