NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208749_1000204

Scaffold Ga0208749_1000204


Overview

Basic Information
Taxon OID3300026077 Open in IMG/M
Scaffold IDGa0208749_1000204 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_DCM_ad_63m_LV_B (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15009
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (61.90%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001026Metagenome / Metatranscriptome802Y
F003869Metagenome / Metatranscriptome464Y
F009691Metagenome / Metatranscriptome314Y
F013094Metagenome / Metatranscriptome274Y
F015105Metagenome / Metatranscriptome257Y
F043983Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0208749_100020418F001026AGGAGGMARHLLVLDDMELTALITHLEGQNEMMCESRLNCSNPSETPDREEVLLNLVYEKAFTMGWDKHINPKVDFDLIKNQDRIYKY
Ga0208749_100020420F043983AGGAGMPLTQDELQTVINLVDARLERQYNEEYQTILDKLTEYQWRSYDV
Ga0208749_10002043F013094GGAGGMISAFFTGVVVAIPTSILAMKLLNSSLFIDNQELRNINEKISIVIHQIDEYREERLAEKEEVN
Ga0208749_10002044F009691GGAGGMKSTLNSKDYVTFARRFVKETVATMDIEELRSLVTNQIHEEIQEGENTYGQSGAFDEMIAWNEDVFLEVAKDFNLELEGV
Ga0208749_10002047F015105AGGAGGMDLQSRKANMVYEIASLINDDPLSAPVLIEELVDIMFDEQIDHIEDVIVNHFGVEVYGEETVELLSQQ
Ga0208749_10002049F003869GGAGGMAKTQYKRCHFYSIGSMMTDEEVHQVWEIVGNALDRNGFTDADGELSIRVYDETLKKNVVNVIDKSLEVKG
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