Scaffold Ga0208749_1000036

Overview

Basic Information

• Taxon OID: 3300026077
• Scaffold ID: Ga0208749_1000036
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_DCM_ad_63m_LV_B (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29216
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (43.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004144	Metagenome / Metatranscriptome	451	Y
F007002	Metagenome	360	N
F087292	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208749_100003618	F087292	AGG	MNCQHYFKKLDKFAVCAFQAEKGMLEIEPKSESCGIYHYVFYGSAKIGKPFKSEFEIVKKGDFFDMKDYLNQPRLYEALEDFYVWGFNTFPNEDWDARLLTDEVFTVEKDSVLVCLDGKPVVNDISLRRFDYSELSTEKSYNVNLGDGVIALFTRSK
Ga0208749_100003620	F007002	N/A	MNDTYLTILNSYGDIVELDYQFDVPSIIDELKCIDKWMDGSNNKKGLTLTGSIDDLELTKRNDCSINDNLKKCPSLIDFFKLWNSLAKCHAVNMNSGSFFRLHRDAYKTTQQMRIFIPLNKTELHEFAFIYDKNIVELKAGRAYLLNTKKQHGSFAMVDDIYHILMGIYINPHNFKVVTNLLPNCIDHE
Ga0208749_100003621	F004144	N/A	MRNIFKESKYHLEVETGWTYWFHLKHSLVNSYKLIKISFKSLVHGLLPFMWKSDAPKGVIVLYHEIMKIQHIQKLDKLRKYPKNERYLPNDIE