Scaffold Ga0208747_1002375

Overview

Basic Information

• Taxon OID: 3300026074
• Scaffold ID: Ga0208747_1002375
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_AAIW_ad_750m_LV_A (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5613
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): -0.015038
  • Long. (^o): -22.962334

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004768	Metagenome / Metatranscriptome	424	Y
F016015	Metagenome / Metatranscriptome	250	Y
F016284	Metagenome / Metatranscriptome	248	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208747_10023751	F016284	AGGA	MTSKKLKDFRKELLDKYSGKLTGYEHLADGTGEYAKTVPKDTEKESEETSEKT
Ga0208747_10023755	F004768	GAGG	MKTATIAILEEGEFIFGSRTNGEYFVRRYEDGEEMGGSFFKTMEEAETDVREYQQLNG
Ga0208747_10023759	F016015	N/A	MINVKKFENRIIKFKRIDSEGNESDQEAEVRRLDYDQNEDIPRSVTARLVDPLNFIITLGYDKSKQKFSGPLGTDIWESNFDIDNFIKSSKMGSADRYMKSPKRNRTSF