Scaffold Ga0207639_10397642

Overview

Basic Information

• Taxon OID: 3300026041
• Scaffold ID: Ga0207639_10397642
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1241
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006520	Metagenome / Metatranscriptome	371	Y
F015943	Metagenome / Metatranscriptome	251	Y
F097956	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207639_103976421	F006520	GAGG	MWILIVYVLIVVVGEAVVVGIGLTLDRTFAAASLPVSLTLFFAVLAFGWPLAVRWTEPKHAKRAKPV
Ga0207639_103976423	F097956	AGGA	MSRYRSRAGLKANEGKLPHHVDMMVPKGGFGVRLNEMHDWHYARSIEAVRGQSRRESGHKIIRWCFADLVSAALFAREFSAETKWPGTAPER
Ga0207639_103976424	F015943	N/A	IVVAACATVAYGVPAWAQTLTKEPDANQLSCGQKVLVENNTCPADQILQITGSCLSTTPRIDVVQTAKGTQYNCIKRNQRSENK