Scaffold Ga0207703_10030228

Overview

Basic Information

• Taxon OID: 3300026035
• Scaffold ID: Ga0207703_10030228
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4279
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium Tous-C9LFEB (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034040	Metagenome	175	Y
F036529	Metagenome / Metatranscriptome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207703_100302285	F036529	N/A	MLYHRDAFAFILTPFLAQEVPPEPDPTRLSAWLIDAAALAAILLVFLKVIDHFKRRPSLEEELEKLLHQLRAELNQLRHEQGEHLAAVRARVEGAHQRVDLLTHDLNNKLQRLPAEIVDLLHKTGVITR
Ga0207703_100302286	F034040	N/A	MNPDPEIPYSDPAALLQARALKILKPCLDYWLDEQTLYLTLNLSRPHIPRAQLEQALRELRDKAYIDFRVDPLSRLTEWRLTPSGRALAQPL